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When I am selecting the files I would like to backup, can I select the root drive but not have all of data in that drive backed up?
Yes, you can do this.  If you do not want to backup certain files and folders within the drive, simply uncheck them from the list of files/folders to be backed up.  For instance, if you select the Local Disk (C:) drive, all of the subdirectories and files located in your drive will be checked off, however you just need to uncheck the anything that you do not want backed up.
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